io.github.cyanheads/pubmed-mcp-server
io.github.cyanheads/pubmed-mcp-server
Tools
Exactly what the server advertised in the scan completed . Effects and capabilities are classified by Squatch from each tool's metadata. Squatch never runs tools. Compared with the previous scan: 0 new, 6 changed.
- Effect: Read 11
- Effect: Execute 1
Showing 12 of 12 tools
| Details | ||
|---|---|---|
| pubmed_search_articles Search PubMed with full query syntax, filters, and date ranges. Returns PMIDs and optional brief summaries. Supports field-specific filters… | Effect: Execute | |
| pubmed_convert_idsChanged Convert between article identifiers (DOI, PMID, PMCID). Accepts up to 50 IDs of a single type per request. Only resolves articles indexed i… | Effect: Read | |
| pubmed_europepmc_fetchChanged Fetch complete Europe PMC records — including the full, untruncated abstract — addressed as `records: [{ source, epmcId }]`, an array even … | Effect: Read | |
| pubmed_europepmc_searchChanged Search Europe PMC, a broad open-access biomedical corpus. Surfaces preprints (`source: PPR`), patents (`source: PAT`), Agricola (`source: A… | Effect: Read | |
| pubmed_fetch_articlesChanged Fetch full article metadata by PubMed IDs. Returns detailed article information including abstract, authors, journal, language and original… | Effect: Read | |
| pubmed_fetch_citation_metricsChanged Fetch NIH iCite citation metrics for PubMed articles: the Relative Citation Ratio (RCR), NIH percentile, citation count, citations per year… | Effect: Read | |
| pubmed_fetch_fulltextChanged Fetch full-text articles from PubMed Central as structured sections — the body, then back matter such as acknowledgments, declarations, and… | Effect: Read | |
| pubmed_find_related Find articles related to a source article — similar content (similar), articles citing this one (cited_by), or articles this one cites (ref… | Effect: Read | |
| pubmed_format_citations Get formatted citations for PubMed articles in one or more formats (apa, mla, bibtex, ris, vancouver). Pass a single format as a string or … | Effect: Read | |
| pubmed_lookup_citation Look up PubMed IDs from partial bibliographic citations. Useful when you have a reference (journal, year, volume, page, author) and need th… | Effect: Read | |
| pubmed_lookup_mesh Search and explore the MeSH (Medical Subject Headings) controlled vocabulary. Returns MeSH records of every type — descriptors, supplementa… | Effect: Read | |
| pubmed_spell_check Spell-check a PubMed search query against NCBI ESpell and get the corrected query back. Use after a zero-hit or thin `pubmed_search_article… | Effect: Read |