io.github.cyanheads/pubchem-mcp-server
io.github.cyanheads/pubchem-mcp-server
Tools
Exactly what the server advertised in the scan completed . Effects and capabilities are classified by Squatch from each tool's metadata. Squatch never runs tools. Compared with the previous scan: 0 new, 2 changed.
- Effect: Read 10
Showing 10 of 10 tools
| Details | ||
|---|---|---|
| pubchem_get_bioactivity Get a compound's bioactivity profile: which assays tested it, activity outcomes (Active/Inactive/Inconclusive), target identifiers (NCBI Ge… | Effect: Read | |
| pubchem_get_compound_3d_structure Get a compound's default 3D conformer — atomic coordinates and bonds — for one CID. format="json" (default) returns atoms and bonds parsed … | Effect: Read | |
| pubchem_get_compound_detailsChanged Get detailed compound information by CID. Returns physicochemical properties (molecular weight, SMILES, InChIKey, XLogP, TPSA, etc.), optio… | Effect: Read | |
| pubchem_get_compound_image Fetch a 2D structure diagram (PNG image) for a compound by CID. | Effect: Read | |
| pubchem_get_compound_interactions Get a compound's interaction data: drug-food interactions, and the molecular targets its bioassays name — one entry per target as kinds def… | Effect: Read | |
| pubchem_get_compound_safety Get GHS (Globally Harmonized System) hazard classification and safety data for one or more compounds by CID. Returns signal word, pictogram… | Effect: Read | |
| pubchem_get_compound_xrefs Get external database cross-references for a compound: PubMed citations, patent IDs, gene associations, CAS and EC numbers with the number … | Effect: Read | |
| pubchem_get_summary Get descriptive summaries for PubChem entities by ID. Supports assays (AID), genes (Gene ID), proteins (UniProt accession), and taxonomy (T… | Effect: Read | |
| pubchem_search_assays Find PubChem bioassays associated with a biological target. Search by gene symbol (e.g. "EGFR"), protein name, NCBI Gene ID, or UniProt acc… | Effect: Read | |
| pubchem_search_compoundsChanged Search PubChem for chemical compounds by identifier (name, SMILES, InChI, or InChIKey, up to 25 per call), molecular formula in Hill notati… | Effect: Read |