io.github.cyanheads/protein-mcp-server
io.github.cyanheads/protein-mcp-server
Tools
Exactly what the server advertised in the scan completed . Effects and capabilities are classified by Squatch from each tool's metadata. Squatch never runs tools. Compared with the previous scan: 0 new, 5 changed.
- Effect: Read 6
- Effect: Execute 1
Showing 7 of 7 tools
| Details | ||
|---|---|---|
| protein_analyze_collection Profile the PDB into distributions and trends over an optional scoping query: counts by method, organism, or polymer composition; resolutio… | Effect: Execute | |
| protein_compare_structuresChanged Structurally align multiple structures (up to the configured batch cap; structures past it are returned in ignored) via the RCSB Structural… | Effect: Read | |
| protein_find_similarChanged Find structurally or evolutionarily related proteins. by:"sequence" runs an RCSB mmseqs2 sequence-similarity search (synchronous; experimen… | Effect: Read | |
| protein_get_annotations Sequence and functional annotation for a protein: UniProt positional features (domains, binding and active sites, PTMs including cross-link… | Effect: Read | |
| protein_get_structureChanged Fetch structures with metadata and coordinate-file URLs. source "experimental" takes PDB entry IDs, and also resolves the computed-model ID… | Effect: Read | |
| protein_search_structuresChanged Search experimental (PDB) and predicted (computed-model) protein structures by free text, protein sequence (triggers an mmseqs2 similarity … | Effect: Read | |
| protein_track_ligandsChanged Ligand discovery and binding-site analysis across the PDB. mode "find_ligand" resolves a name or formula to chemical component IDs with met… | Effect: Read |