io.github.cyanheads/interpro-mcp-server
io.github.cyanheads/interpro-mcp-server
MCP Bill of Materials
A machine-readable inventory of what this server exposes and depends on: tools with their effects, transports, packages, findings and provenance (schema version 1.0). Third-party text in it is escaped. Also available from the REST API at /api/v1/servers/4fb3d444-0fcf-47d2-a190-e4837e8d9a49/mcbom.
MCP Bill of Materials
root{21}
schema_version: "1.0"
bom_format: "squatch-mcbom"
generator{3}
name: "squatch-mcp"
classifier_version: "rules_v1@2026-10-11.1"
unicode_version: "18.0.0"
server{7}
name: "io.github.cyanheads/interpro-mcp-server"
title: null
description: "Search InterPro entries, map domains onto proteins and PDB structures, and scan raw sequences."
version: "0.2.0"
homepage_url: null
source: "official_registry"
upstream_status: "active"
publisher{4}
namespace: "io.github.cyanheads"
display_name: "io.github.cyanheads"
type: "registry_namespace"
status: "unclaimed"
organization: null
repository{5}
url: "https://github.com/cyanheads/interpro-mcp-server"
provider: "github"
owner: "cyanheads"
name: "interpro-mcp-server"
verified: false
packages[2]
0{4}
registry_type: "npm"
identifier: "@cyanheads/interpro-mcp-server"
version: "0.2.0"
transport: "stdio"
1{4}
registry_type: "npm"
identifier: "@cyanheads/interpro-mcp-server"
version: "0.2.0"
transport: "streamable-http"
transports[3]
0{5}
kind: "package"
type: "stdio"
endpoint_url: null
endpoint_host: null
auth_type: "unknown"
1{5}
kind: "package"
type: "streamable-http"
endpoint_url: null
endpoint_host: null
auth_type: "unknown"
2{5}
kind: "remote"
type: "streamable-http"
endpoint_url: "https://interpro.caseyjhand.com/mcp"
endpoint_host: "interpro.caseyjhand.com"
auth_type: "none"
auth{3}
type: "none"
authorization_servers[0]
scopes[0]
protocol{4}
era: "modern"
negotiated_version: "2026-07-28"
supported_versions[0]
transport_type: "streamable-http"
tools[9]
0{9}
name: "interpro_find_proteins_by_domain"
title: "Find proteins by domain"
effect: "READ"
effect_confidence: 0.888
capabilities[3]
0{2}
capability: "DATABASE_ACCESS"
confidence: 0.538
1{2}
capability: "PERSONAL_DATA"
confidence: 0.739
2{2}
capability: "SENSITIVE_PERSONAL_DATA"
confidence: 0.565
risk_severity: "MEDIUM"
fingerprint: "96a3b9991daea7e0c25b7a4f058e85055b2d86a2c2a64d48d7f49ab9df7dbcf7"
input_schema_fingerprint: "1c902947b7a34648b0fc6d3860973ab134f765e1d8e03a4cb37cc8d3fcaa28fb"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: true
openWorldHint: true
1{9}
name: "interpro_get_clan"
title: "InterPro clan metadata and members"
effect: "READ"
effect_confidence: 0.813
capabilities[1]
0{2}
capability: "PERSONAL_DATA"
confidence: 0.669
risk_severity: "LOW"
fingerprint: "61cd043097d1cdf55aa0bbc71df4f002dc7717b3e20d9b6f5d409f7230b6f107"
input_schema_fingerprint: "dca642d30d1969b2d04dff123d3891348671e2bc58f94964adaab8037eff8cbb"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: true
openWorldHint: true
2{9}
name: "interpro_get_entry"
title: "InterPro entry metadata"
effect: "READ"
effect_confidence: 0.78
capabilities[1]
0{2}
capability: "DATABASE_ACCESS"
confidence: 0.653
risk_severity: "INFO"
fingerprint: "a1f9cf5f72501d3a7ab2588806d1b7faedbce02d3ce6b2acd896e8875c51c4a0"
input_schema_fingerprint: "161109c58724b239cc8c98f975b65a8270667f2e8fcd4912bb2ebcc09001e9f8"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: true
openWorldHint: true
3{9}
name: "interpro_get_protein_domains"
title: "Map protein domains"
effect: "READ"
effect_confidence: 0.813
capabilities[2]
0{2}
capability: "LOCATION"
confidence: 0.61
1{2}
capability: "PERSONAL_DATA"
confidence: 0.64
risk_severity: "LOW"
fingerprint: "0387d6782c8789c03e5ebb0ed90a0490efb5eec0891ff6784fbe2b1b54a5a347"
input_schema_fingerprint: "b1dbe0973b93d1c7f79e0a4ec8a9939db3e65340cc84477a8b4f08df4d0d4197"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: true
openWorldHint: true
4{9}
name: "interpro_get_scan_result"
title: "Read an InterProScan job"
effect: "READ"
effect_confidence: 0.888
capabilities[0]
risk_severity: "INFO"
fingerprint: "e7e8701b07d0164f41c6ed40554eb887a1024690049f5fe1461f32a7d3cdc726"
input_schema_fingerprint: "a983d1ba4edb1c66160a09e8e099ecc07199dd318c683a185975c56885d5eaf2"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: true
openWorldHint: true
5{9}
name: "interpro_get_structure_domains"
title: "Map structure domains"
effect: "READ"
effect_confidence: 0.813
capabilities[2]
0{2}
capability: "LOCATION"
confidence: 0.53
1{2}
capability: "PERSONAL_DATA"
confidence: 0.55
risk_severity: "LOW"
fingerprint: "a1bbfeed52974ad29f0c117fe09d766a0b7e45435b7478831050d413158e6968"
input_schema_fingerprint: "07d6fa4ed016d840a6b1f8de298416f7ac572d0183b185271b46fd74c7c15793"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: true
openWorldHint: true
6{9}
name: "interpro_list_reference"
title: "InterPro reference vocabulary"
effect: "READ"
effect_confidence: 0.78
capabilities[0]
risk_severity: "INFO"
fingerprint: "7f33491d670fac48388463b111690013e99cf03713339c094bc0e2514deebb3c"
input_schema_fingerprint: "1c25a193042c4ca53816db445ddf15002e1e22a1846ddebd4e7c897aca5e8859"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: true
openWorldHint: true
7{9}
name: "interpro_scan_sequence"
title: "Scan a protein sequence"
effect: "READ"
effect_confidence: 0.72
capabilities[0]
risk_severity: "INFO"
fingerprint: "c645e6cdff393834d76c9388c4a898192698ee028599f459364fed4d503a92ae"
input_schema_fingerprint: "904f80209dad90f5bf1fed877f450f4d4b1a6b535de2fe8c51a726203091d199"
annotations{5}
title: null
readOnlyHint: false
destructiveHint: false
idempotentHint: false
openWorldHint: true
8{9}
name: "interpro_search_entries"
title: "Search InterPro entries"
effect: "READ"
effect_confidence: 0.888
capabilities[2]
0{2}
capability: "DATABASE_ACCESS"
confidence: 0.874
1{2}
capability: "PERSONAL_DATA"
confidence: 0.567
risk_severity: "LOW"
fingerprint: "ec2992983dc5e486a5310d45f75dada53dc06535e0216f6335ebc98d77a55857"
input_schema_fingerprint: "c50f4487867d2ac2bd7da910371563e43f8285aad9d3738fcdde4fc1f6b4f008"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: true
openWorldHint: true
resources[2]
0{4}
key: "skill://interpro-guide/SKILL.md"
kind: "resource"
mime_type: "text/markdown"
fingerprint: "ce1321a6ab06ed85c3dcb54e0f44cb63291edce6a317702df247e23eadc3c60f"
1{4}
key: "skill://{+path}"
kind: "template"
mime_type: null
fingerprint: "9777dc7f1cf468158c157032a0ccebf9b50270f4e8753af9ccaf2fe99890ccf0"
prompts[0]
extensions[1]
0: "io.modelcontextprotocol/skills"
data{6}
privacy_completeness: "not_provided"
data_categories[0]
ai_training: null
retention_policy: null
processing_regions[0]
subprocessors[0]
external_integrations[1]
0{3}
host: "interpro.caseyjhand.com"
registrable_domain: "caseyjhand.com"
source: "transport"
findings[0]
trust{9}
registry_namespace: "verified_upstream"
publisher_identity: "unverified"
organization: "unverified"
domain: "unverified"
repository: "unverified"
source_provenance: "partial"
security_scan: "no_critical_findings"
privacy_transparency: "not_provided"
monitoring: "active"
provenance{4}
registry_name: "io.github.cyanheads/interpro-mcp-server"
registry_content_sha256: "8b8f4524489c48a70f24d9b4b353fade859a62b50b37e9b1679c1345260735c3"
scan_snapshot_fingerprint: "a496d9b36160afc7d6935c7bce050b64fb900f296d09cb83afbb1a6aa4e941fa"
scanner_version: "1.0.0"
timestamps{4}
generated_at: "2026-11-15T02:12:03.733Z"
observed_at: "2026-11-07T18:52:33.357+00:00"
registry_published_at: "2026-10-28T15:46:05.345143+00:00"
registry_updated_at: null