io.github.cyanheads/gnomad-genetics-mcp-server
io.github.cyanheads/gnomad-genetics-mcp-server
Tools
Exactly what the server advertised in the scan completed . Effects and capabilities are classified by Squatch from each tool's metadata. Squatch never runs tools.
- Effect: Read 7
- Effect: Execute 1
Showing 8 of 8 tools
| Details | ||
|---|---|---|
| gnomad_dataframe_query Run a read-only SQL SELECT against a canvas table staged by gnomad_list_gene_variants (table gene_variants) or gnomad_search_clinvar (table… | Effect: Execute | |
| gnomad_dataframe_describe List the tables staged on a canvas and their columns (name and type) so you can write correct SQL for gnomad_dataframe_query. Use the canva… | Effect: Read | |
| gnomad_get_coverage Fetch gnomAD sequencing-coverage summary across a gene, transcript, or region — mean and median read depth, plus the mean fraction of sampl… | Effect: Read | |
| gnomad_get_gene_constraint Fetch gnomAD loss-of-function constraint for a gene — pLI (probability of LoF intolerance; >0.9 intolerant), LOEUF (oe_lof_upper, the headl… | Effect: Read | |
| gnomad_get_variant Fetch the full gnomAD population record for one or more variants — allele count/number/frequency overall and broken down per genetic-ancest… | Effect: Read | |
| gnomad_get_variant_cooccurrence Estimate whether two variants in the same gene sit on different haplotypes (in trans — compound heterozygous) or on the same one (in cis), … | Effect: Read | |
| gnomad_list_gene_variants List every gnomAD variant in a gene, transcript, or region with allele frequencies, filtering allele frequencies, zygosity counts, predicte… | Effect: Read | |
| gnomad_search_clinvar Search ClinVar (NCBI E-utilities) for a gene and return its classified variants — the germline clinical significance with its review status… | Effect: Read |