io.github.cyanheads/ensembl-mcp-server
io.github.cyanheads/ensembl-mcp-server
Tools
Exactly what the server advertised in the scan completed . Effects and capabilities are classified by Squatch from each tool's metadata. Squatch never runs tools.
- Effect: Read 7
Showing 7 of 7 tools
| Details | ||
|---|---|---|
| ensembl_get_homology Find orthologs and/or paralogs of a gene across species. Returns each homolog's stable ID, species, homology type (ortholog_one2one, orthol… | Effect: Read | |
| ensembl_get_sequence Fetch the DNA, cDNA, CDS, or protein sequence for a gene, transcript, protein, or genomic region. Returns a window of the sequence — the fi… | Effect: Read | |
| ensembl_get_xrefs Retrieve cross-database references for a gene or feature — HGNC, UniProt, EntrezGene, OMIM, RefSeq, Reactome, and others. Returns each xref… | Effect: Read | |
| ensembl_list_species List species supported by Ensembl with display name, common name, assembly, taxon ID, and division. Required discovery step — species names… | Effect: Read | |
| ensembl_lookup_gene Resolve a gene by symbol + species (or by stable ID) to its Ensembl ID, genomic location (chr:start-end:strand), biotype, description, and … | Effect: Read | |
| ensembl_predict_variant Predict the functional consequences of a sequence variant using the Ensembl Variant Effect Predictor (VEP). Accepts three input formats: HG… | Effect: Read | |
| ensembl_query_region Find genomic features overlapping a chromosomal region: genes, transcripts, variants, regulatory elements, or exons. Returns each feature w… | Effect: Read |