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io.github.cyanheads/brapi-mcp-server

io.github.cyanheads/brapi-mcp-server

by io.github.cyanheadsยท v0.11.0Source: Official MCP Registry

MCP Bill of Materials

A machine-readable inventory of what this server exposes and depends on: tools with their effects, transports, packages, findings and provenance (schema version 1.0). Third-party text in it is escaped. Also available from the REST API at /api/v1/servers/f52c8054-f2f0-4eb3-841a-94c7531bd847/mcbom.

MCP Bill of Materials

root{21}
schema_version: "1.0"
bom_format: "squatch-mcbom"
generator{3}
name: "squatch-mcp"
classifier_version: "rules_v1@2026-10-11.1"
unicode_version: "18.0.0"
server{7}
name: "io.github.cyanheads/brapi-mcp-server"
title: null
description: "Collaborative BrAPI v2.1 MCP workspace: studies, germplasm, genotypes across Breedbase, T3, more."
version: "0.11.0"
homepage_url: null
source: "official_registry"
upstream_status: "active"
publisher{4}
namespace: "io.github.cyanheads"
display_name: "io.github.cyanheads"
type: "registry_namespace"
status: "unclaimed"
organization: null
repository{5}
url: "https://github.com/cyanheads/brapi-mcp-server"
provider: "github"
owner: "cyanheads"
name: "brapi-mcp-server"
verified: false
packages[2]
0{4}
registry_type: "npm"
identifier: "@cyanheads/brapi-mcp-server"
version: "0.11.0"
transport: "stdio"
1{4}
registry_type: "npm"
identifier: "@cyanheads/brapi-mcp-server"
version: "0.11.0"
transport: "streamable-http"
transports[3]
0{5}
kind: "package"
type: "stdio"
endpoint_url: null
endpoint_host: null
auth_type: "unknown"
1{5}
kind: "package"
type: "streamable-http"
endpoint_url: null
endpoint_host: null
auth_type: "unknown"
2{5}
kind: "remote"
type: "streamable-http"
endpoint_url: "https://brapi.caseyjhand.com/mcp"
endpoint_host: "brapi.caseyjhand.com"
auth_type: "none"
auth{3}
type: "none"
authorization_servers[0]
scopes[0]
protocol{4}
era: "modern"
negotiated_version: "2026-07-28"
supported_versions[0]
transport_type: "streamable-http"
tools[22]
0{9}
name: "brapi_build_phenotype_matrix"
title: "Brapi Build Phenotype Matrix"
effect: "READ"
effect_confidence: 0.626
capabilities[1]
0{2}
capability: "DATABASE_ACCESS"
confidence: 0.582
risk_severity: "INFO"
fingerprint: "4f06c9460fe967ba3b142e4acae02a39d0a15da26e1f4c0df79974e8cf3142a3"
input_schema_fingerprint: "d8d00e2ca51b604ffaf1a391f878a12191a40976f8b8aa2adaa803ca3cccd8a1"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: null
openWorldHint: true
1{9}
name: "brapi_connect"
title: "Brapi Connect"
effect: "WRITE"
effect_confidence: 0.639
capabilities[5]
0{2}
capability: "AUTHENTICATION"
confidence: 0.988
1{2}
capability: "EXTERNAL_COMMUNICATION"
confidence: 0.843
2{2}
capability: "PERSONAL_DATA"
confidence: 0.61
3{2}
capability: "SECRETS"
confidence: 0.965
4{2}
capability: "SECURITY_CONTROL"
confidence: 0.907
risk_severity: "HIGH"
fingerprint: "3c8e037dcd208514bd23d36fb9f40e57fe1c3dd3319eb50a54966fb4e9d4dd64"
input_schema_fingerprint: "8ab3a918b0883e9521b63aa93b685f4ca48f999ceec7bde0fd75a487cbf86242"
annotations{5}
title: null
readOnlyHint: false
destructiveHint: null
idempotentHint: true
openWorldHint: true
2{9}
name: "brapi_dataframe_describe"
title: "Brapi Dataframe Describe"
effect: "WRITE"
effect_confidence: 0.533
capabilities[0]
risk_severity: "LOW"
fingerprint: "252357286204a1c4809cb31610d374aee318401fd41beaced2707c211e83673b"
input_schema_fingerprint: "5f843606d0571ad39b3224247554c259a0aa9a703d95a10e584df168a965b510"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: true
openWorldHint: false
3{9}
name: "brapi_dataframe_query"
title: "Brapi Dataframe Query"
effect: "EXECUTE"
effect_confidence: 0.846
capabilities[1]
0{2}
capability: "DATABASE_ACCESS"
confidence: 0.513
risk_severity: "CRITICAL"
fingerprint: "706d3116ed78545b37f5e3fb585d34d498f4607027733c97cbb93bbcb33d2693"
input_schema_fingerprint: "bbca5d03d898cb694d7b7c0001e75f20abc6e0a3614b4e77bd09c42721190640"
annotations{5}
title: null
readOnlyHint: false
destructiveHint: null
idempotentHint: false
openWorldHint: false
4{9}
name: "brapi_describe_filters"
title: "Brapi Describe Filters"
effect: "READ"
effect_confidence: 0.738
capabilities[1]
0{2}
capability: "EXTERNAL_COMMUNICATION"
confidence: 0.735
risk_severity: "INFO"
fingerprint: "352a509e30d942223dba5b95436c0efa7b5051324f73643989af5d42396d1936"
input_schema_fingerprint: "355bf2b6ab3e96f885017a3e025280d3ae6bd7a201b2c9ec270c235bdfcced95"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: true
openWorldHint: null
5{9}
name: "brapi_export_genotype_matrix"
title: "Brapi Export Genotype Matrix"
effect: "READ"
effect_confidence: 0.626
capabilities[1]
0{2}
capability: "DATABASE_ACCESS"
confidence: 0.63
risk_severity: "INFO"
fingerprint: "fe93907a26220404767065a5a3f94165e7715e1e146f73bca3ab3a05fa0ea617"
input_schema_fingerprint: "a1b1da083f0b4b2c626024689ddde678a21bcb1ed97c7d8d1c313e95e25ed7c3"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: null
openWorldHint: true
6{9}
name: "brapi_find_genotype_calls"
title: "Brapi Find Genotype Calls"
effect: "READ"
effect_confidence: 0.626
capabilities[1]
0{2}
capability: "DATABASE_ACCESS"
confidence: 0.863
risk_severity: "INFO"
fingerprint: "394cea5394a45c01c63abd9e38c7444dc67e0abee29e7184c0d9c223faa32095"
input_schema_fingerprint: "743bd1160f2f4bd3ff881fba059e3e845f0f6da24f9b80c27772d65facca2c72"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: null
openWorldHint: true
7{9}
name: "brapi_find_germplasm"
title: "Brapi Find Germplasm"
effect: "READ"
effect_confidence: 0.813
capabilities[1]
0{2}
capability: "DATABASE_ACCESS"
confidence: 0.666
risk_severity: "INFO"
fingerprint: "c6069a19e156b46d619345f5671bc44936d3979df8c7e6bce53126ddddb34999"
input_schema_fingerprint: "8038bdc60d22d22f469b609974fbe9c542a271f35874b8058860c8d9b014c85a"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: null
openWorldHint: true
8{9}
name: "brapi_find_images"
title: "Brapi Find Images"
effect: "READ"
effect_confidence: 0.813
capabilities[2]
0{2}
capability: "DATABASE_ACCESS"
confidence: 0.698
1{2}
capability: "FILE_ACCESS"
confidence: 0.592
risk_severity: "INFO"
fingerprint: "1822ea57ceac3be8cdc9be167f5875ec2622f99c4367243ac54e5f3d145558ca"
input_schema_fingerprint: "95dace19cb016c67dd53d305d89733080a0d725077e2e49fc1b309618a85b35e"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: null
openWorldHint: true
9{9}
name: "brapi_find_locations"
title: "Brapi Find Locations"
effect: "READ"
effect_confidence: 0.813
capabilities[2]
0{2}
capability: "DATABASE_ACCESS"
confidence: 0.509
1{2}
capability: "LOCATION"
confidence: 0.99
risk_severity: "LOW"
fingerprint: "4f32aa985a8ee95eec92ae7189524b40563b1511203a610d0f698ae98d1ba576"
input_schema_fingerprint: "3f062cad13651668b14ee2069c7f6e7f349826dc0336df64171da55178ab1f70"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: null
openWorldHint: true
10{9}
name: "brapi_find_observations"
title: "Brapi Find Observations"
effect: "READ"
effect_confidence: 0.841
capabilities[1]
0{2}
capability: "DATABASE_ACCESS"
confidence: 0.843
risk_severity: "INFO"
fingerprint: "636b841703b8ac94f15ff32527a0bd82055d3118f445589ca5d175930755bae6"
input_schema_fingerprint: "2efc5420f6ef26fd1b7bdc210ce7866566c86cf599cee0745e65da2af8851ca0"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: null
openWorldHint: true
11{9}
name: "brapi_find_studies"
title: "Brapi Find Studies"
effect: "READ"
effect_confidence: 0.711
capabilities[1]
0{2}
capability: "DATABASE_ACCESS"
confidence: 0.645
risk_severity: "INFO"
fingerprint: "3916f7bd2adbcbf074a8750ad52dd40c2aa36579a45b4e37f37d204f5650e1de"
input_schema_fingerprint: "1431fab037e2a585738078283e1a14d19b8fe0cd558e40e4eb7ba6c3903bb6bf"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: null
openWorldHint: true
12{9}
name: "brapi_find_variables"
title: "Brapi Find Variables"
effect: "READ"
effect_confidence: 0.813
capabilities[1]
0{2}
capability: "DATABASE_ACCESS"
confidence: 0.782
risk_severity: "INFO"
fingerprint: "398dd30ea53941ce8ca6277ebb03857c0ffe9e5445c22e0df3c8d4aec84f5f2b"
input_schema_fingerprint: "2090e89e202b660e87935c485ca840f87ddd4350e2c10c8193e944259180af04"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: null
openWorldHint: true
13{9}
name: "brapi_find_variants"
title: "Brapi Find Variants"
effect: "READ"
effect_confidence: 0.813
capabilities[1]
0{2}
capability: "DATABASE_ACCESS"
confidence: 0.645
risk_severity: "INFO"
fingerprint: "25228533cf32470f7cceeb4b35f567485aa8d4c8f27c685f3ce000b33fbf5daf"
input_schema_fingerprint: "6318cc9fbd19283d6a898ff564a2917f5c5145891cd50e486fe86af4baf1e356"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: null
openWorldHint: true
14{9}
name: "brapi_germplasm_performance"
title: "Brapi Germplasm Performance"
effect: "READ"
effect_confidence: 0.422
capabilities[1]
0{2}
capability: "DATABASE_ACCESS"
confidence: 0.716
risk_severity: "INFO"
fingerprint: "87de9160a18ab4f6e68b061d7d93db292d32774e7aa06a6100349b6b36ec7c46"
input_schema_fingerprint: "82bd15a98bc899be229ea640631b46a13d20c01f789d9545f87b9294f2edd680"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: null
openWorldHint: true
15{9}
name: "brapi_get_germplasm"
title: "Brapi Get Germplasm"
effect: "READ"
effect_confidence: 0.78
capabilities[1]
0{2}
capability: "DATABASE_ACCESS"
confidence: 0.52
risk_severity: "INFO"
fingerprint: "9a2b4169c82954b58056a65498ec8240e8e6d06744bd1a9f7c40198965aa69e6"
input_schema_fingerprint: "745bfc34e2b5e6ebe44c06cb1c9ebd64838b311cf1668f7bb4298a82e35fbfba"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: true
openWorldHint: null
16{9}
name: "brapi_get_image"
title: "Brapi Get Image"
effect: "READ"
effect_confidence: 0.813
capabilities[1]
0{2}
capability: "DATABASE_ACCESS"
confidence: 0.52
risk_severity: "INFO"
fingerprint: "8d0e32e6c56e2886fb6acb15cbff06a916f7b919718b654264eee4b12e62c13a"
input_schema_fingerprint: "5bf6cc1bba0da6773c6e29cab60e926a2b65a4b16299bac84ff0d37f5e443165"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: true
openWorldHint: true
17{9}
name: "brapi_get_study"
title: "Brapi Get Study"
effect: "READ"
effect_confidence: 0.813
capabilities[2]
0{2}
capability: "DATABASE_ACCESS"
confidence: 0.52
1{2}
capability: "LOCATION"
confidence: 0.59
risk_severity: "LOW"
fingerprint: "eff026f045e087fc41f1e6c2b30221bdc809b84310b8d7090aae6bde8121d553"
input_schema_fingerprint: "93a40148393fbfad46ddfd9555fc2268e745e94ceb8aad61e524c2daaa17026c"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: true
openWorldHint: null
18{9}
name: "brapi_raw_get"
title: "Brapi Raw Get"
effect: "READ"
effect_confidence: 0.66
capabilities[2]
0{2}
capability: "EXTERNAL_COMMUNICATION"
confidence: 0.582
1{2}
capability: "FILE_ACCESS"
confidence: 0.558
risk_severity: "INFO"
fingerprint: "51f2dc719b1f5a09b570d489adb7bdf5b59fc76762766a54c08a76aa89708269"
input_schema_fingerprint: "98eee2ccaae347a7d83e0ff1938c06a9a5fcef6ed5d7cff45188e56da97d86c6"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: null
openWorldHint: true
19{9}
name: "brapi_raw_search"
title: "Brapi Raw Search"
effect: "READ"
effect_confidence: 0.711
capabilities[0]
risk_severity: "INFO"
fingerprint: "3a6d1d68d37a892e14a4bf3f75d60050a19db755a2dd77c15b3fca14996e8723"
input_schema_fingerprint: "a876dc8710c54efd1b84cf17a9c6b9d6238299a34010995b5e37b47389d6e9bb"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: null
openWorldHint: true
20{9}
name: "brapi_server_info"
title: "Brapi Server Info"
effect: "READ"
effect_confidence: 0.682
capabilities[0]
risk_severity: "INFO"
fingerprint: "4e4f07d2000967e7efecbf900b38624f2f6df69e7d48263749ad5e254b109ec3"
input_schema_fingerprint: "4d01d8b2720af5f34d4d0f0281d0f11d2c6f0a91c9c21d05a71e421ee380d134"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: true
openWorldHint: null
21{9}
name: "brapi_walk_pedigree"
title: "Brapi Walk Pedigree"
effect: "READ"
effect_confidence: 0.32
capabilities[2]
0{2}
capability: "DATABASE_ACCESS"
confidence: 0.721
1{2}
capability: "PERMISSION_MANAGEMENT"
confidence: 0.59
risk_severity: "INFO"
fingerprint: "4b1ad3de29f6bd1b805c6093b042c24c7b5a7c10b349f9ed91e1f706e4c94c50"
input_schema_fingerprint: "b366578edc1cd7fca81711b89c8001eea55cb8b293daa9ff8abe823b880f2a5d"
annotations{5}
title: null
readOnlyHint: true
destructiveHint: null
idempotentHint: null
openWorldHint: true
resources[15]
0{4}
key: "brapi://calls"
kind: "resource"
mime_type: "application/json"
fingerprint: "3641b8b4e880c9e676f590056aea5c9e13266e4e03c3969eefef71444e4cca7c"
1{4}
key: "brapi://filters/germplasm"
kind: "resource"
mime_type: "application/json"
fingerprint: "d5d61f01e9e89ca1020c090e48aee3e7279259e928ac2c704fb1f75ba5fb3f01"
2{4}
key: "brapi://filters/images"
kind: "resource"
mime_type: "application/json"
fingerprint: "b1e7d9b4dcbab127dab55ea58de13fb5b3444f260f01a996520f80bb581feb35"
3{4}
key: "brapi://filters/locations"
kind: "resource"
mime_type: "application/json"
fingerprint: "62a549c8e29569244d5a513affa6e8905fe8006ed0215ec5cf40884eab451007"
4{4}
key: "brapi://filters/observations"
kind: "resource"
mime_type: "application/json"
fingerprint: "f6c914dad44c8efd21f0414758c4bdc4917206ce64c2596ec7bb146b522b434d"
5{4}
key: "brapi://filters/studies"
kind: "resource"
mime_type: "application/json"
fingerprint: "d8d326f19c5be9ab4f3d04c673e2262f7f5135bb2f7856333ee30ade207b22e6"
6{4}
key: "brapi://filters/variables"
kind: "resource"
mime_type: "application/json"
fingerprint: "567d1e988ba193be7b62c12bbcc68874305491329c876246f259bcc6558c4259"
7{4}
key: "brapi://filters/variants"
kind: "resource"
mime_type: "application/json"
fingerprint: "f7bcfcd1e7b6ad2539b6bea3e034ee091a325e0987bd024dab14031a6e87b4b2"
8{4}
key: "brapi://server/info"
kind: "resource"
mime_type: "application/json"
fingerprint: "98b674c2a752e7fe4b6efa9aca6b36550546a50f4996bf3f7bdd01bc43c4d0a1"
9{4}
key: "skill://brapi-guide/SKILL.md"
kind: "resource"
mime_type: "text/markdown"
fingerprint: "1ca8dda13c3cd14d24adcc761cee86d5da4d92c3ac359e430edba7ad4431baab"
10{4}
key: "brapi://filters/{endpoint}"
kind: "template"
mime_type: "application/json"
fingerprint: "9aaccc306402a922604ae3a22f91c893b72d84f728a088dfff6bd181b21ca16c"
11{4}
key: "brapi://germplasm/{germplasmDbId}"
kind: "template"
mime_type: "application/json"
fingerprint: "f3867258da80c5497d93d10081b2055b41321e40e01a525aeed8a7382d57c19b"
12{4}
key: "brapi://study/{studyDbId}"
kind: "template"
mime_type: "application/json"
fingerprint: "e404dc01bb23b8cb0dd6145b2a4fe53a234438b2f0e7d1cc605a8aaf27df4f90"
13{4}
key: "brapi://variable/{observationVariableDbId}"
kind: "template"
mime_type: "application/json"
fingerprint: "0365f532f2a48ed9055e86f5e36a17519b713bb713e05be889ec7ed4141760b2"
14{4}
key: "skill://{+path}"
kind: "template"
mime_type: null
fingerprint: "9777dc7f1cf468158c157032a0ccebf9b50270f4e8753af9ccaf2fe99890ccf0"
prompts[2]
0{2}
name: "brapi_eda_study"
fingerprint: "fa5f41691af5d3c2618a30357ef9ebc66649c8cdebed281f693ec8d5990ceb91"
1{2}
name: "brapi_meta_analysis"
fingerprint: "42fece586ac8aeeb9662600ddefe1fef11cf7cc921201a4b180fe9f0c80738a0"
extensions[1]
0: "io.modelcontextprotocol/skills"
data{6}
privacy_completeness: "not_provided"
data_categories[0]
ai_training: null
retention_policy: null
processing_regions[0]
subprocessors[0]
external_integrations[1]
0{3}
host: "brapi.caseyjhand.com"
registrable_domain: "caseyjhand.com"
source: "transport"
findings[35]
0{6}
check_id: "SQ-CONFORMANCE-MODERN-FAILURE"
category: "conformance"
severity: "LOW"
title: "Protocol conformance checks failed"
subject_type: "server"
subject_name: null
1{6}
check_id: "SQ-SERVER-AUTH-NONE-WRITE"
category: "authentication"
severity: "HIGH"
title: "State-changing tools available without authentication"
subject_type: "server"
subject_name: null
2{6}
check_id: "SQ-TOOL-ANNOTATION-UNDERCLAIM"
category: "annotations"
severity: "LOW"
title: "Annotations understate what the tool does"
subject_type: "tool"
subject_name: "brapi_dataframe_describe"
3{6}
check_id: "SQ-TOOL-CONCEALMENT"
category: "prompt_injection"
severity: "HIGH"
title: "Text asks the AI model to hide actions from the user"
subject_type: "tool"
subject_name: "brapi_find_germplasm"
4{6}
check_id: "SQ-TOOL-CONCEALMENT"
category: "prompt_injection"
severity: "HIGH"
title: "Text asks the AI model to hide actions from the user"
subject_type: "tool"
subject_name: "brapi_find_images"
5{6}
check_id: "SQ-TOOL-CONCEALMENT"
category: "prompt_injection"
severity: "HIGH"
title: "Text asks the AI model to hide actions from the user"
subject_type: "tool"
subject_name: "brapi_find_locations"
6{6}
check_id: "SQ-TOOL-CONCEALMENT"
category: "prompt_injection"
severity: "HIGH"
title: "Text asks the AI model to hide actions from the user"
subject_type: "tool"
subject_name: "brapi_find_observations"
7{6}
check_id: "SQ-TOOL-CONCEALMENT"
category: "prompt_injection"
severity: "HIGH"
title: "Text asks the AI model to hide actions from the user"
subject_type: "tool"
subject_name: "brapi_find_studies"
8{6}
check_id: "SQ-TOOL-CONCEALMENT"
category: "prompt_injection"
severity: "HIGH"
title: "Text asks the AI model to hide actions from the user"
subject_type: "tool"
subject_name: "brapi_find_variables"
9{6}
check_id: "SQ-TOOL-CONCEALMENT"
category: "prompt_injection"
severity: "HIGH"
title: "Text asks the AI model to hide actions from the user"
subject_type: "tool"
subject_name: "brapi_find_variants"
10{6}
check_id: "SQ-TOOL-CREDENTIAL-ARGUMENT"
category: "schema"
severity: "MEDIUM"
title: "Asks the AI model to supply credentials as arguments"
subject_type: "tool"
subject_name: "brapi_connect"
11{6}
check_id: "SQ-TOOL-CREDENTIAL-ARGUMENT"
category: "schema"
severity: "MEDIUM"
title: "Asks the AI model to supply credentials as arguments"
subject_type: "tool"
subject_name: "brapi_connect"
12{6}
check_id: "SQ-TOOL-CREDENTIAL-ARGUMENT"
category: "schema"
severity: "MEDIUM"
title: "Asks the AI model to supply credentials as arguments"
subject_type: "tool"
subject_name: "brapi_connect"
13{6}
check_id: "SQ-TOOL-CREDENTIAL-ARGUMENT"
category: "schema"
severity: "MEDIUM"
title: "Asks the AI model to supply credentials as arguments"
subject_type: "tool"
subject_name: "brapi_connect"
14{6}
check_id: "SQ-TOOL-CROSS-TOOL-REFERENCE"
category: "prompt_injection"
severity: "MEDIUM"
title: "Gives instructions about other tools"
subject_type: "tool"
subject_name: "brapi_connect"
15{6}
check_id: "SQ-TOOL-EXFIL-DIRECTIVE"
category: "prompt_injection"
severity: "MEDIUM"
title: "Asks the AI model to pass conversation data or secrets"
subject_type: "tool"
subject_name: "brapi_connect"
16{6}
check_id: "SQ-TOOL-INJECTION-INSTRUCTIONS"
category: "prompt_injection"
severity: "LOW"
title: "Instructions addressed to the AI model"
subject_type: "tool"
subject_name: "brapi_build_phenotype_matrix"
17{6}
check_id: "SQ-TOOL-INJECTION-INSTRUCTIONS"
category: "prompt_injection"
severity: "MEDIUM"
title: "Instructions addressed to the AI model"
subject_type: "tool"
subject_name: "brapi_connect"
18{6}
check_id: "SQ-TOOL-INJECTION-INSTRUCTIONS"
category: "prompt_injection"
severity: "LOW"
title: "Instructions addressed to the AI model"
subject_type: "tool"
subject_name: "brapi_export_genotype_matrix"
19{6}
check_id: "SQ-TOOL-INJECTION-INSTRUCTIONS"
category: "prompt_injection"
severity: "LOW"
title: "Instructions addressed to the AI model"
subject_type: "tool"
subject_name: "brapi_find_genotype_calls"
20{6}
check_id: "SQ-TOOL-INJECTION-INSTRUCTIONS"
category: "prompt_injection"
severity: "HIGH"
title: "Instructions addressed to the AI model"
subject_type: "tool"
subject_name: "brapi_find_germplasm"
21{6}
check_id: "SQ-TOOL-INJECTION-INSTRUCTIONS"
category: "prompt_injection"
severity: "HIGH"
title: "Instructions addressed to the AI model"
subject_type: "tool"
subject_name: "brapi_find_images"
22{6}
check_id: "SQ-TOOL-INJECTION-INSTRUCTIONS"
category: "prompt_injection"
severity: "HIGH"
title: "Instructions addressed to the AI model"
subject_type: "tool"
subject_name: "brapi_find_locations"
23{6}
check_id: "SQ-TOOL-INJECTION-INSTRUCTIONS"
category: "prompt_injection"
severity: "HIGH"
title: "Instructions addressed to the AI model"
subject_type: "tool"
subject_name: "brapi_find_observations"
24{6}
check_id: "SQ-TOOL-INJECTION-INSTRUCTIONS"
category: "prompt_injection"
severity: "HIGH"
title: "Instructions addressed to the AI model"
subject_type: "tool"
subject_name: "brapi_find_studies"
25{6}
check_id: "SQ-TOOL-INJECTION-INSTRUCTIONS"
category: "prompt_injection"
severity: "HIGH"
title: "Instructions addressed to the AI model"
subject_type: "tool"
subject_name: "brapi_find_variables"
26{6}
check_id: "SQ-TOOL-INJECTION-INSTRUCTIONS"
category: "prompt_injection"
severity: "HIGH"
title: "Instructions addressed to the AI model"
subject_type: "tool"
subject_name: "brapi_find_variants"
27{6}
check_id: "SQ-TOOL-INJECTION-INSTRUCTIONS"
category: "prompt_injection"
severity: "LOW"
title: "Instructions addressed to the AI model"
subject_type: "tool"
subject_name: "brapi_germplasm_performance"
28{6}
check_id: "SQ-TOOL-INJECTION-INSTRUCTIONS"
category: "prompt_injection"
severity: "LOW"
title: "Instructions addressed to the AI model"
subject_type: "tool"
subject_name: "brapi_get_germplasm"
29{6}
check_id: "SQ-TOOL-INJECTION-INSTRUCTIONS"
category: "prompt_injection"
severity: "LOW"
title: "Instructions addressed to the AI model"
subject_type: "tool"
subject_name: "brapi_get_image"
30{6}
check_id: "SQ-TOOL-INJECTION-INSTRUCTIONS"
category: "prompt_injection"
severity: "LOW"
title: "Instructions addressed to the AI model"
subject_type: "tool"
subject_name: "brapi_get_study"
31{6}
check_id: "SQ-TOOL-INJECTION-INSTRUCTIONS"
category: "prompt_injection"
severity: "LOW"
title: "Instructions addressed to the AI model"
subject_type: "tool"
subject_name: "brapi_raw_get"
32{6}
check_id: "SQ-TOOL-INJECTION-INSTRUCTIONS"
category: "prompt_injection"
severity: "LOW"
title: "Instructions addressed to the AI model"
subject_type: "tool"
subject_name: "brapi_raw_search"
33{6}
check_id: "SQ-TOOL-INJECTION-INSTRUCTIONS"
category: "prompt_injection"
severity: "LOW"
title: "Instructions addressed to the AI model"
subject_type: "tool"
subject_name: "brapi_server_info"
34{6}
check_id: "SQ-TOOL-INJECTION-INSTRUCTIONS"
category: "prompt_injection"
severity: "LOW"
title: "Instructions addressed to the AI model"
subject_type: "tool"
subject_name: "brapi_walk_pedigree"
trust{9}
registry_namespace: "verified_upstream"
publisher_identity: "unverified"
organization: "unverified"
domain: "unverified"
repository: "unverified"
source_provenance: "partial"
security_scan: "findings_detected"
privacy_transparency: "not_provided"
monitoring: "active"
provenance{4}
registry_name: "io.github.cyanheads/brapi-mcp-server"
registry_content_sha256: "6de3a79be00e7a43ede8ee0c8a8910bf1dd0d189ec59f1b1b59eaee625073cc2"
scan_snapshot_fingerprint: "49566de9c3ff801340113fb1efb1710d6916ec646d4f1515638e25cf4afd016f"
scanner_version: "1.0.0"
timestamps{4}
generated_at: "2026-11-15T02:14:07.595Z"
observed_at: "2026-11-11T12:19:05.273+00:00"
registry_published_at: "2026-11-11T06:09:36.26755+00:00"
registry_updated_at: null