Genomic Intelligence
ai.genomicintelligence/genomic-intelligence
Tools
Exactly what the server advertised in the scan completed . Effects and capabilities are classified by Squatch from each tool's metadata. Squatch never runs tools. Compared with the previous scan: 0 new, 1 changed.
- Effect: Read 14
- Effect: Write 1
Showing 15 of 15 tools
| Details | ||
|---|---|---|
| store_inline_sequence Store a human-pasted sequence and return a handle to re-use it. For a sequence you've already pasted into the conversation, this … | Effect: Write | |
| fetch_ensembl_sequence Fetch a gene's reference sequence from Ensembl and store it. Returns a handle ({ref, name, length, preview, ...}). Pass the … | Effect: Read | |
| fetch_gene_for_expression Fetch a gene's sequence prepared for expression prediction. Resolves the gene's canonical-transcript TSS via Ensembl and stores a … | Effect: Read | |
| fetch_region Fetch a genomic region by coordinates from Ensembl and store it. For "find the genes in chr8:127,680,000-127,800,000"-style reques… | Effect: Read | |
| find_genes Find genes (transcript intervals) in a genomic region (async, ~8-25s). Takes 1,000–500,000 bp. The floor is the strictest of the s… | Effect: Read | |
| find_genes_and_predict_expressionChanged Find genes in a sequence, then predict each gene's expression (composite). Server-side chaining in ONE call: finds genes (transcri… | Effect: Read | |
| get_job Poll an async job once. Returns the {data, meta} result if complete, a progress envelope if still running, or an error env… | Effect: Read | |
| list_jobs List the caller's recent async jobs (also available as gi://jobs/recent). | Effect: Read | |
| list_models List available models for a task. Use to discover model ids before passing one as the `model` argument to a predict tool. … | Effect: Read | |
| load_demo_sequence Load a bundled demo reference sequence and return a handle. The server ships one curated, task-correct positive control per task … | Effect: Read | |
| predict_chromatin Chromatin annotation across 919 features (G0 DeepSEA). 200–500,000 bp. The model reads a 1,000 bp context window; 200–999 bp is ac… | Effect: Read | |
| predict_enhancer Predict enhancer activity (G0 DeepSTARR). 50–500,000 bp. 50 bp is the task's admission floor (the API 422s below it), not a … | Effect: Read | |
| predict_expression Predict a gene's expression from the sequence around its TSS. Expression is cell-type-specific, so `description` (cell type / … | Effect: Read | |
| predict_promoter Predict promoter regions (G0). 300–500,000 bp. Returns the {data, meta} envelope: data.regions lists predicted promoters w… | Effect: Read | |
| predict_splice Predict splice donor/acceptor sites (G0 BigBird). 100–500,000 bp. The model reads a 15,000 bp context window, so anything shorter … | Effect: Read |